Publications


Featured Publications:

Karasov, T. L., Almario, J.*, Friedemann, C.*, Ding, W., Giolai, M., Heavens, D., Kersten, S., Lundberg, D. S., Neumann, M., Regalado, J., Neher, R. A., Kemen, E. & Weigel, D. Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host Microbe 24, 168–179.e4 (2018).

Karasov, T. L.*, Kniskern, J. M.*, Gao, L., DeYoung, B. J., Ding, J., Dubiella, U., Lastra, R. O., Nallu, S., Roux, F., Innes, R. W., Barrett, L. G., Hudson, R. R. & Bergelson, J. The long-term maintenance of a resistance polymorphism through diffuse interactions. Nature 512, 436–440 (2014).

All Publications

1. Karasov, T. L. & Lundberg, D. S. The changing influence of host genetics on the leaf fungal microbiome throughout plant development. PLoS biology vol. 20 e3001748 (2022).

2. Karasov, T. L., Neumann, M., Shirsekar, G., Monroe, G., PATHODOPSIS Team, Weigel, D. & Schwab, R. Drought selection on Arabidopsis populations and their microbiomes. bioRxiv 2022.04.08.487684 (2022) doi:10.1101/2022.04.08.487684. (In review at Nature microbiology)

3. Shalev, O., Karasov, T. L., Lundberg, D. S., Ashkenazy, H., Pramoj Na Ayutthaya, P. & Weigel, D. Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant. Nature Ecology & Evolution 1–14 (2022).

4. Lundberg, D. S., de Pedro Jové, R., Ayutthaya, P. P. N., Karasov, T. L., Skriptchak, O. S., Poersch, K., Ding, W., Bollman-Giolai, A., Bezrukov, I. & Weigel, D. Contrasting patterns of microbial dominance in the Arabidopsis thaliana phyllosphere. bioRxiv 2021.04.06.438366 (2021) doi:10.1101/2021.04.06.438366. (Accepted at PNAS)

5. Machado, H. E., Bergland, A. O., Taylor, R., Tilk, S., Behrman, E., Dyer, K., Fabian, D. K., Flatt, T., González, J., Karasov, T. L., Kim, B., Kozeretska, I., Lazzaro, B. P., Merritt, T. J., Pool, J. E., O’Brien, K., Rajpurohit, S., Roy, P. R., Schaeffer, S. W., Serga, S., Schmidt, P. & Petrov, D. A. Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila. Elife 10, (2021).

6. Regalado, J., Lundberg, D. S., Deusch, O., Kersten, S., Karasov, T., Poersch, K., Shirsekar, G. & Weigel, D. Combining whole-genome shotgun sequencing and rRNA gene amplicon analyses to improve detection of microbe--microbe interaction networks in plant leaves. ISME J. 1–15 (2020).

7. Karasov, T. L., Shirsekar, G., Schwab, R. & Weigel, D. What natural variation can teach us about resistance durability. Curr. Opin. Plant Biol. 56, 89–98 (2020).

8. Karasov, T. L., Neumann, M., Duque-Jaramillo, A., Kersten, S., Bezrukov, I., Schröppel, B., Symeonidi, E., Lundberg, D. S., Regalado, J., Shirsekar, G., Bergelson, J. & Weigel, D. The relationship between microbial population size and disease in the Arabidopsis thaliana phyllosphere. bioRxiv 828814 (2020) doi:10.1101/828814.

9. Karasov, T. L., Almario, J., Friedemann, C., Ding, W., Giolai, M., Heavens, D., Kersten, S., Lundberg, D. S., Neumann, M., Regalado, J., Neher, R. A., Kemen, E. & Weigel, D. Arabidopsis thaliana and Pseudomonas Pathogens Exhibit Stable Associations over Evolutionary Timescales. Cell Host Microbe 24, 168–179.e4 (2018).

10. Karasov, T. L., Chae, E., Herman, J. J. & Bergelson, J. Mechanisms to Mitigate the Trade-Off between Growth and Defense. Plant Cell 29, 666–680 (2017).

11. Karasov, T. L., Barrett, L., Hershberg, R. & Bergelson, J. Similar levels of gene content variation observed for Pseudomonas syringae populations extracted from single and multiple host species. PLoS One 12, e0184195 (2017).

12. Vetter, M., Karasov, T. L. & Bergelson, J. Differentiation between MAMP Triggered Defenses in Arabidopsis thaliana. PLoS Genet. 12, e1006068 (2016).

13. Karasov, T. L., Kniskern, J. M., Gao, L., DeYoung, B. J., Ding, J., Dubiella, U., Lastra, R. O., Nallu, S., Roux, F., Innes, R. W., Barrett, L. G., Hudson, R. R. & Bergelson, J. The long-term maintenance of a resistance polymorphism through diffuse interactions. Nature 512, 436–440 (2014).

14. Karasov, T. L., Horton, M. W. & Bergelson, J. Genomic variability as a driver of plant–pathogen coevolution? Curr. Opin. Plant Biol. 18, 24–30 (2014).

15. Karasov, T., Messer, P. W. & Petrov, D. A. Evidence that adaptation in Drosophila is not limited by mutation at single sites. PLoS Genet. 6, e1000924 (2010).

16. González, J., Karasov, T. L., Messer, P. W. & Petrov, D. A. Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila. PLoS Genet. 6, e1000905 (2010).

*These authors contributed equally